PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_31862_f_4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family HD-ZIP
Protein Properties Length: 218aa    MW: 24813.2 Da    PI: 9.6769
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_31862_f_4genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.78.2e-183790456
                    -SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  4 RttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                     ++f++eq++ Le+ F + + ++   ++ +LAk+lgL+ rqV +WFqN+Ra++k
  Neem_31862_f_4 37 TRRFSDEQIRLLETIFVSeSTKLEPMKKLQLAKELGLQPRQVAIWFQNKRARWK 90
                    468**************88**********************************9 PP

2HD-ZIP_I/II117.67e-3836126291
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     + rr+s+eq++lLE+ F +e+ kLep +K +la+eLglqprqva+WFqn+RAR+k+kq+E+dy++Lk++yd l+++ e+L+ke+++L +e+
  Neem_31862_f_4  36 NTRRFSDEQIRLLETIFVSEStKLEPMKKLQLAKELGLQPRQVAIWFQNKRARWKSKQIEQDYAKLKANYDCLASRFESLKKEKDTLLAEV 126
                     579**************99888****************************************************************99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.41E-172293IPR009057Homeodomain-like
PROSITE profilePS5007116.2123192IPR001356Homeobox domain
SMARTSM003892.4E-163496IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.4E-173799IPR009057Homeodomain-like
PfamPF000463.2E-153790IPR001356Homeobox domain
CDDcd000866.69E-143893No hitNo description
PRINTSPR000317.5E-66372IPR000047Helix-turn-helix motif
PROSITE patternPS0002706790IPR017970Homeobox, conserved site
PRINTSPR000317.5E-67288IPR000047Helix-turn-helix motif
PfamPF021836.3E-1392126IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MESFREDSAA SSAEANSETF TFPVHLQKKK KIKSKNTRRF SDEQIRLLET IFVSESTKLE  60
PMKKLQLAKE LGLQPRQVAI WFQNKRARWK SKQIEQDYAK LKANYDCLAS RFESLKKEKD  120
TLLAEVLNEQ MGSYTGSLEK GNIKCELGAS KLSFMEELQE NNINSVGIGQ YGNEGHEFIN  180
VERINNDSYH LKNGLVTAAA ALTPVGYWIR RQAVARSG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008234673.14e-49PREDICTED: homeobox-leucine zipper protein ATHB-12-like
TrEMBLQ9XH731e-49Q9XH73_PRUAR; Homeobox leucine zipper protein
STRINGGLYMA06G13890.11e-41(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17513810
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.24e-40homeobox 7